Preprints

The impact of localization and registration accuracy on estimates of deep brain stimulation electrode position in stereotactic space (2024)
Abbas, M., Taha, A., Gilmore, G., Santyr, B., Chalil, A., Jog, M., MacDougall, K., Parrent, A. G., Peters, T. M., & Lau, J. C.
This study examined the effects of misregistration on electrode position in deep brain stimulation (DBS) by using the AFIDs framework to measure registration accuracy in patient scans. AFID registration errors (AFREs) revealed spatial patterns of misregistration that accounted for 28% of the variance in electrode position, highlighting AFIDs as a valuable tool for assessing registration accuracy, quality control, and optimization in DBS research.
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Brain Charts for the Rhesus Macaque Lifespan (2024)
Alldritt., S. et al.

WIN-affiliated researcher: Everling, S.

This study created normative brain growth charts for rhesus macaques using over 1,500 MRI scans, addressing a gap in nonhuman primate developmental models. It mapped lifespan trajectories of brain volume, cortical thickness, and surface area, identifying key developmental milestones and similarities to human brain maturation. The resulting open-access resource enables cross-species comparisons and supports translational neuroscience, particularly in studies with small NHP sample sizes.
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Investigating the Polygenic Relationship Between Cannabis Use and Schizophrenia in the All of Us Research Program (2025)
Austin-Zimmerman, I., Thorpe, H. H. A., Meredith, J. J., Khokhar, J., Ge. T., Di Forti, M., Agrawal, A., Johnson, E. C., & Sanchez-Roige, S.
This study investigated the genetic relationship between cannabis use and schizophrenia using data from the All of Us Research Program. Researchers found that genetic risk for both cannabis use disorder (CUD) and schizophrenia independently contributed to heavy cannabis use and schizophrenia, with evidence of pleiotropy even among individuals without documented cannabis use. These results highlight the importance of incorporating genetic risk for cannabis use in models of schizophrenia to better understand its underlying causes.
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Aberrant Neural Entrainment to Word-Level Speech Patterns in Fragile X Syndrome: Evidence for a Statistical Learning Deficit (2025)
Batterink, L., , Liu, L., Westerkamp, G., Citarella, J., Siekierski, P., Voorhees, L., Ethbridge, L. E., Smith, E., Elmaghraby, R., Erickson, C. A., ElSayed, Z., Goel, A., Wu, S. W., & Pedapati, E. V.
Fragile X syndrome (FXS) impairs statistical learning, a key process for language acquisition. EEG data show children with FXS have reduced word-level learning despite intact syllable processing, suggesting difficulty integrating syllables into words and highlighting statistical learning as a potential therapeutic target.
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A mathematical language for linking fine-scale structure in spikes from hundreds to thousands of neurons with behaviour (2025)
Busch, A. N., Budzinski, R. C., Pasini, F. W., Mináč, J., Michaels, J. A., Roussy, M., Gulli, R. A., Corrigan, B. W., Pruszynski, J. A., Martinez-Trujillo, J., & Muller, L. E.
This study introduces a novel mathematical method for analyzing complex spike patterns from large-scale neural recordings. By decomposing spike data into simple, structured elements, the approach enables comparison across trials, sub-pattern detection, and links to behavior using a clear distance measure. Applied to macaque motor and prefrontal cortex recordings, the method uncovered previously hidden neural structures that predict memory-guided decisions and errors, offering a powerful new tool for interpreting large-scale neural activity.
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Longitudinal Associations Between Screen Time, Brain Development, and Language Outcomes in Early Childhood (2025)
Choi, E. J., Nichols, E. S., Tomfohr-Madsen, L., Giesbrecht, G. F., Manning, K. Y., Lebel, C. A., Duerden, E. G.
Language development in toddlers depends on both brain maturation and environmental input, and excessive screen time may negatively affect this process. Our study shows that smaller pars triangularis volumes at age two predict poorer language outcomes and greater screen use at age three, highlighting how early vulnerabilities can amplify later reliance on screens and alter developmental trajectories.
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Distinct perceptual and conceptual representations of natural actions along the lateral and dorsal visual streams: an EEG-fMRI fusion study (2025)
Dima, D. C., Culham, J. C., & Mohsenzadeh, Y.
Actions are fundamental to our visual world, yet the neural computations supporting their perception remain poorly understood. By combining EEG, fMRI, and representational similarity analysis, we show that action understanding unfolds along a posterior-to-anterior gradient, with rapid spatiotemporal dynamics and distinct conceptual representations—especially of action targets—encoded in LOTC and pSTS.
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Syntax and Schizophrenia: A meta-analysis of comprehension and production (2024)
Elleuch, D., Chen, Y., Luo, Q., & Palaniyappan, L.
This systematic review and meta-analysis examined grammatical (syntactic) impairments in people with schizophrenia across 45 studies. Findings showed strong and consistent evidence that individuals with schizophrenia have significant difficulties in both understanding and producing syntactically complex language, with syntactic comprehension being the most affected. The study highlights the importance of addressing these language deficits through targeted cognitive and linguistic interventions, and it underscores the potential for personalized communication strategies in clinical care.
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Mapping the topographic organization of the human zona incerta using diffusion MRI (2024)
Haast, R. A. M., Kai, J., Taha, A., Liu, V., Gilmore, G., Guye, M., Khan, A. R., & Lau, J. C.
This study examined the topographic organization of the zona incerta (ZI) using in vivo diffusion MRI and data-driven connectivity. The findings revealed a rostral-caudal gradient, with the rostral ZI connecting to prefrontal regions and the caudal ZI connecting to sensorimotor cortices, as well as a central ZI region linked to the dorsal prefrontal cortex. These results, replicated across datasets and individuals, provide insights into the ZI’s role in motor, cognitive, and emotional control, with implications for refining neuromodulatory targets.
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Structural covariance of early visual cortex is negatively associated with PTSD symptoms: A Mega-Analysis from the ENIGMA PTSD workgroup (2025)
Harnett, N. G. et al.

WIN-affiliated researchers: Densmore, M., Théberge, J., & Lanius, R.

This study examined whether structural patterns in the early visual cortex are linked to PTSD symptoms. Using two large datasets, researchers found that reduced structural covariance in this brain region was specifically associated with PTSD symptoms, but not with depression or general stress. These findings suggest a potential neural signature of PTSD that may help improve diagnosis and understanding of the disorder.
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Hypothalamic recurrent inhibition regulates functional states of stress effector neurons (2025)
Ichiyama, A. Mestern, S., Tamas, F., Allman, B. L., Nicola, W., Bains, J. Muller, L., & Inoue W.
Stress rapidly shifts CRH neuron activity, and we identify recurrent inhibition as the key circuit motif enabling these transitions. Combining imaging, modeling, and chemogenetics, we show PVN-projecting GABAergic neurons constrain CRH neurons at baseline and permit stress-induced activation, advancing understanding of neural state regulation.
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Motor sequence learning involves better prediction of the next action and optimization of movement trajectories (2025)
Kashefi, M., Diedrichson, J., & Pruszynski, J. A.
This study disentangles the what and how components of sequence learning in one experimental paradigm. We confirm that when sequence items are unknown, most learning is learning what to do. However, when the sequence items are known from the beginning, practice still leads to improvements that are effector-specific and generalizable to other sequences.
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Emotional Processing After Severe Traumatic Brain Injury: Insights from Functional MRI and Pupillometry (2025)
Kazazian, K., O Zhang, S., de Jeu, J., Lawrence, P. K., Sanders, W. R., Meydan, A., bremmer, F., Mallas, E., Bodien, Y. G., Dams-O'Connor, K., Edlow, B. L., & Li, L. M.
This study examined brain network and autonomic mechanisms of emotional dysfunction in individuals with chronic severe traumatic brain injury (TBI). Compared to healthy controls, participants with TBI showed reduced insula activation to emotional music, decreased connectivity across salience, limbic, and default mode networks, and blunted pupillary responses reflecting sympathetic dysfunction. These findings suggest that disrupted brain network activity and autonomic function may underlie emotional dysregulation after severe TBI.
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Early identification of language disorders using natural language processing and machine learning: Challenges and emerging approaches (2023)
Lammert, J. M., Roberts, A. C., McRae, K., Batterink, L. J., & Butler, B. E.
Recent advances in artificial intelligence provide opportunities to automate the capture and representation of complex features of human language, potentially improving the efficiency of language assessment. This review presents computerized approaches for analyzing narrative language and identifying language disorders in children, highlighting key methods, challenges, and implications for clinical practice.
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Sign language experience has little effect on face and biomotion perception in bimodal bilinguals (2022)
Lammert, J. M., Levine, A., Koshkebaghi, D., & Butler, B. E.
This study examined whether learning sign language influences visual perception by comparing bimodal bilinguals (hearing signers) and hearing non-signers on face matching and motion discrimination tasks. While no group differences were found, higher ASL proficiency predicted better motion perception, suggesting that linguistic experience may shape visual processing in specific ways.
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Cerebellar growth is associated with domain-specific cerebral maturation and socio-linguistic behavioral outcomes (2025)
Manoli et al.

Win-affiliated research: Diedrichsen, J.

The cerebellum develops rapidly in early life, paralleling cognitive and behavioral changes, yet its role in supporting cognition remains unclear. By mapping cerebellar growth from infancy to young adulthood, we show coordinated maturation with the cerebral cortex, steeper growth in posterior association areas, and links to socio-linguistic behaviors, establishing its contribution to emerging higher cognitive functions.
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Spared cognitive and social function following perinatal ablation of ATRX despite transient microglia dysregulation (2025)
Mansour, K. Y., Shafiq, S., & Bérubé, N. G.
Mutations in the chromatin-remodelling factor ATRX underlie syndromic ID and ASD, but the role of microglial ATRX in early brain development remains unclear. Using a tamoxifen-inducible Cx3cr1-CreERT2 system to delete Atrx in microglia, we found that perinatal ATRX loss drives chronic microglial reactivity and turnover without affecting neurobehaviours, suggesting developmental resilience of neural circuits to transient microglial dysregulation.
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Are online corrections to visual targets really a distinct class of movement? (2025)
Mekhaiel, D. Y., Goodale, M. A., & Corneil, B. D.
Humans can rapidly and accurately adjust reaching movements when visual targets jump, a capacity previously thought to rely on a distinct “automatic pilot” engaged only during ongoing actions. Our findings instead show that both mid-flight corrections and reaches initiated from rest share a common nested control system, driven by an early subcortical reflex and later cortical recruitment whose influence can be strategically preset by task demands.
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Sensory expectations shape neural population dynamics in motor circuits (2024)
Michaels, J. A., Kashefi, M., Zheng, J., Codol, O., Weiler, J., Kersten, R., Gribble, P. L., Diedrichsen, J., & Pruszynski, J. A.
Sensory expectations influence movement preparation, as humans and monkeys probabilistically cued about a future mechanical perturbation adjust their preparatory activity and improve corrective responses. High-density neural recordings reveal that these expectations shape motor cortical dynamics, with neural population activity scaling with perturbation probability and driving rapid responses through learned sensory-feedback integration.
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Increased circulating TREM2+ microglial extracellular vesicles in aged APP/PS1 Alzheimer’s disease rats(2025)
Myers, S. J., Allman, B. L., Pasternak, S. H., Whitehead S. N., & Roseborough, A. D.
TREM2 is a microglial marker linked to Alzheimer’s disease, and circulating TMEM119+/TREM2+ extracellular vesicles (EVs) may serve as biomarkers. In APP/PS1 rats, these EVs increased with age and correlated with cognitive decline, while brain TREM2 expression varied by region and genotype. This study highlights TMEM119+/TREM2+ EVs as a potential indicator of microglial activity and cognition in AD.
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Microglial morphology reflects cognitive status in the aging rat brain (2025)
Myers, S. J., Roseborough, A. D., Bayona, C. X., , Carrese, C., Allman, B. L., & Whitehead S. N.
Age-related cognitive decline is linked to changes in microglial morphology, but their relationship remains unclear. In rats aged 3–15 months, we found region-specific shifts in microglial morphotypes that correlated with impairments in memory and cognitive flexibility. These findings suggest that microglial morphological profiling captures heterogeneity relevant to cognitive aging.
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Registered Report: Replication and Extension of Nozaradan, Peretz, Missal and Mouraux (2011) (2025)
Nave, K. M., Hannon, E. E., & Snyder, J. S.
This study conducted 13 independent replications of Nozaradan et al. (2011) to test whether neural activity at imagined beat frequencies reflects conscious beat perception. While small effects were observed, they were much weaker than in the original study and not influenced by music or dance training, suggesting that larger samples are needed to detect such effects reliably. Contrary to expectations, only neural activity at the stimulus frequency—not the imagery-related frequency—predicted task performance, raising questions about the reliability of frequency tagging for studying conscious beat perception.
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Probing Autism and ADHD subtypes using cortical signatures of the T1w/T2w-ratio and morphometry (2025)
Norbom, L. B. et al.

WIN-affiliated researcher: Robert Nicolson

This study examined brain-based subtypes across individuals with autism, ADHD, and typical development using MRI measures, focusing on cortical myelination (T1w/T2w-ratio). Although no significant differences in myelination were found between diagnostic groups, multimodal clustering (combining myelination, cortical thickness, and surface area) revealed three distinct subgroups that cut across diagnoses. These findings suggest that multimodal brain imaging may help identify biologically meaningful subtypes, potentially improving personalized approaches to neurodevelopmental conditions.
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Lipidomic signatures in microglial extracellular vesicles during acute inflammation: a gateway to neurological biomarkers (2025)
Ollen-Bittle, N., Wang, W., Molina-Bean, K., Zhao, S., Buzzato, A. Z., Dong, Y., Li, L., & Whitehead, S. N.
Extracellular vesicles (EVs) carry molecular signatures of their parent cells and hold promise as biomarkers for neurological diseases, yet their lipid content remains understudied. In this study, we used LC-MS/MS to analyze lipidomic changes in BV-2 microglia and their EVs following pro-inflammatory stimulation with LPS, revealing distinct lipid profiles that reflect cellular activation states. These findings highlight the potential of EV lipidomics to infer cellular function and support further exploration of EV lipids as biomarkers in neurological disease.
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Altered brain structure in an ATRX-deficient mouse model of autism spectrum disorder (2025)
Quesnel., K., Ellegood, J., Lerch, J. P., & Bérubé, N. G.
Changes in the ATRX gene affect brain development and are linked to intellectual disability and autism, and our previous work showed that removing this gene early caused mice to display autism-like behaviors. In this study, brain scans revealed that male mice without ATRX had smaller brains and bodies, while both sexes showed structural differences in regions for memory, movement, thinking, and sensing, helping explain how early disruptions can lead to autism-related behaviors.
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Multiplexed BOLD oscillations reveal the interplay of normalization and attention (2025)
Rafeh, R. W., Ngo, G. N., Muller, L. E., Khan, A. R., Menon, R. S., Mur, M., & Schmitz, T. W.
This study looked at the link between attention and divisive normalization in humans. They used frequency-tagged fMRI to isolate visual cortical populations that simultaneously encode multiple competing inputs. The results show that responses of these sites are suppressed during inattention and enhanced during attention - offering a noninvasive translational bridge to study fine-grained computations underlying attentional selection.
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Modular dynamics of conscious and unconscious states in marmoset cortex (2025)
Standage, D. I., Hori, Y., Nashed, J. Y., Gale, D. J., Menon, R. S., Everling, S., & Gallivan, J. P.
General anesthetics induce unconsciousness, but their impact on large-scale brain networks is less understood. Using fMRI in marmosets, we show that isoflurane weakens and fragments functional networks compared to wakefulness, supporting the view that consciousness emerges from dynamic network interactions that anesthetics disrupt by reducing synaptic efficacy
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Auditory Brainstem Development in Autism: From Childhood Hypo-Responsivity to Adult Hyper-Reactivity (2025)
Seif, A., Guerville, R., Rajab, M., Marceau-Linhares, C., Schaaf, K., Schmid, S., & Stevenson, R. A.
This study examined auditory brainstem development in Autistic children and adults using ABRs and ASRs to understand sensory processing differences. Autistic children showed reduced and delayed auditory responses, while Autistic adults exhibited heightened reactivity, suggesting a developmental shift from early hypo-responsivity to later hyper-reactivity. These findings highlight how early auditory disruptions may lead to long-term changes in sensory processing in Autism.
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Viral mimicry and memory deficits upon microglial deletion of ATRX (2024)
Shafiq, S., Ghahramani, A., Mansour, K., Pena-Ortiz, M., Sunstrum, J. K., Jiang, Y., Rowland, M. E., Inoue, W., Bérubé, N. G.
This study shows that targeted loss of the ATRX chromatin remodeler in microglia alters chromatin accessibility profiles, leading to the de-repression of endogenous retroelements, triggering viral mimicry. Functionally, we find that ATRX microglial deficiency alters the electrophysiological properties of hippocampal neurons and causes deficits in object recognition and spatial memory.
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A precision health approach to medication management in neurodivergence: a model development and validation study using four international cohorts (2025)
Van de Bosch, J. J. F. et al.

WIN-affiliated researchers: Diedrichsen, J., Mur, M.

Representational similarity analysis (RSA) characterizes neural representations and evaluates computational models. Our new open-source Python toolbox, rsatoolbox, introduces advances in distance measures, model evaluation, and statistical inference, enabling neuroscientists to link theory and experiment in the era of big models and big data.
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A precision health approach to medication management in neurodivergence: a model development and validation study using four international cohorts (2025)
Vandewouw, M. M. et al.

WIN-affiliated researcher: Robert Nicolson

This study developed and tested AI models to predict successful psychotropic medication use in neurodivergent children, aiming to reduce trial-and-error prescribing. Using data from research cohorts and clinical electronic medical records, the models accurately predicted medication success across stimulants, antidepressants, and antipsychotics, with strong performance in both internal and external datasets. The findings support the feasibility of AI-based decision aids to improve personalized medication management and enhance care in community settings.
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Focality of sound source placement by higher (9th) order ambisonics and perceptual effects of spectral reproduction errors (2025)
Zargarnezhad, N., Mesquita, B., Macpherson, E. A., & Johsnrude, I.
This study systematically evaluates AudioDome capabilities at the Western Interdisciplinary Research Building, assessing the strengths and limitations of its sound reproduction technologies for research applications. The findings presented in this manuscript offer critical insights into the methodological validity of the AudioDome, providing WIN researchers with a foundational framework for its effective use in experimentation.
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